Liveaboard
Wake up already at the next island. The only way to reach Padar and Rinca outside the day-boat window.

Itineraries
The shortest route that does not feel rushed: Rinca and Kalong on day one, Padar and Pink Beach on day two, a manta stop on the way home.
Book This RouteDepart Labuan Bajo, register at Loh Buaya and take the ranger-led trek. Anchor at Kalong for the flying foxes at dusk.
Pre-dawn climb to the Padar ridge, then snorkelling at Pink Beach and a Komodo Island stop.
Manta Point or Batu Bolong at first light, then the run back to Labuan Bajo by early afternoon.
Format
The same three days run very differently depending on where you sleep.
Wake up already at the next island. The only way to reach Padar and Rinca outside the day-boat window.
Hotel in Labuan Bajo each night. More comfort ashore, but two long crossings a day and later arrivals.
Shared open trips are the cheapest entry. A private charter is priced per boat, so it scales with group size.
Dry-season weekends go first. In the wet season, keep a spare day for a postponed crossing.
Komodo Luxury run this route regularly and will tell you which nights on the boat are worth paying for.